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Version: Next

CLI Menu Options

When running sse <config.json> without --auto or --validate, an interactive menu appears.

The menu shows:

  • Welcome message with version
  • Device information (CPU/GPU)
  • Configuration settings table
  • Current storage state (✅ Present, ❌ Missing, ⚪ Not configured)
  • Available actions
warning

Remember to Quit before loading the .h5 file into the visualisation module.

Main Actions​

Run all​

Execute all processing steps in sequence:

  1. Extractions
  2. Aggregations
  3. Reductions
  4. Computations
  5. Autoclusters
  6. Metrics
  7. Trajectories
  8. Relative trajectories

Individual Processing Steps​

Run extractions

  • Extract features from audio files using configured extractors
  • Generates raw embeddings and timestamps

Run aggregations

  • Aggregate extracted data into time windows
  • Creates intervals with integration periods

Run reductions

  • Perform dimensionality reduction (UMAP/PCA)
  • Prepares data for visualisation

Run computations

  • Compute embeddings and distance matrices
  • Used for clustering and analysis

Run autoclusters

  • Automatic clustering using HDBSCAN
  • Generates cluster labels

Run computations

  • Generate mean distance matrix (MDM) from reduced/embedded data
  • Iteration count improves UMAP stability (PCA/embeddings use single pass)

Run metrics

  • Calculate statistics and analysis metrics
  • Includes diversity indices and temporal patterns

Run trajectories

  • Trace paths through reduced space
  • Shows movement patterns over time

Run relative trajectories

  • Calculate distances from reference points
  • Compares trajectories relative to baseline

Export Options​

Export dataframe as .csv

  • Export interval data as CSV file
  • Useful for external analysis in Excel/R/Python

Export computations as .npy

  • Export embedding computations in NumPy format
  • For custom analysis or visualisation

Export mean distances matrix as .npy

  • Export distance matrix in NumPy format
  • For custom clustering or analysis

Quit​

Exit the menu and close the application safely.

tip

Use arrow keys to navigate, Enter to select, and Ctrl+C to quit at any time.